PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015492
Common NameLOC102578490
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 178aa    MW: 19981.2 Da    PI: 5.7471
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015492genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-053153123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C++ Fs+   L  H++ H
  PGSC0003DMP400015492 31 YRCSFCKRGFSNAQALGGHMNIH 53
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-62957No hitNo description
Gene3DG3DSA:3.30.160.601.6E-42955IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4683158IPR007087Zinc finger, C2H2
SMARTSM003550.00533153IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MENDIPHSSN SQKYQITWGS DGGVISQVKC YRCSFCKRGF SNAQALGGHM NIHRKDRAKL  60
REISIETSDH TKKSVSPSDH IHAPSNTDEL ILQQDISSDD MSNPSKRPCV TLEEQQHQQQ  120
HHISKEKDEN HELIIGGDIL QLPLFVDSPS KDEINKDMQL SVDDSKLDLE LRLGPEP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015492
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161545.11e-128PREDICTED: transcriptional regulator TAC1-like
TrEMBLM1AH561e-127M1AH56_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000227401e-128(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-18C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]