PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015689
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 260aa    MW: 29143.9 Da    PI: 6.2625
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015689genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.83.2e-2259137571
               E2F_TDP   5 sLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           +Lr+++ +   +++k+e+ g++t++eva+e+++e               d+kn+rRR+YD lNVL+al++ie+ +++eirwkg
  PGSC0003DMP400015689  59 GLRQYSIM---VCKKVEDkGRITYSEVADEIIAElmtmensssvplnesDEKNIRRRVYDSLNVLMALDVIER-DRKEIRWKG 137
                           77777777...**************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.3E-883259IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.6E-3453141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-2255137IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.85E-1658138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.3E-1859137IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011382.9E-34141257IPR014889Transcription factor DP, C-terminal
PfamPF087818.9E-30152257IPR014889Transcription factor DP, C-terminal
CDDcd144588.09E-27152244IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.71E-33153257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDVKISASTI QGFNRRCSEG KSSFRATTDY DNKTLHVNQH AQTSDTAKLK KGSKIVGGGL  60
RQYSIMVCKK VEDKGRITYS EVADEIIAEL MTMENSSSVP LNESDEKNIR RRVYDSLNVL  120
MALDVIERDR KEIRWKGLPN SDARDMDETK GHAELLAKIG KKASYLKDLE EQLASLQTLK  180
LRNEQSCKST SGPSQGFSLP FILVQTAPHA TVEVEISEDM QLVHFDFNSV PFSLHDDAYV  240
LKLMRNYELL ESESVSQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-2650144395PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015689
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754482e-59HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341038.10.0PREDICTED: transcription factor-like protein DPA
SwissprotQ9FNY35e-82DPA_ARATH; Transcription factor-like protein DPA
TrEMBLM1AHN00.0M1AHN0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000230360.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.32e-84Transcription factor DP
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]