PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015721
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 336aa    MW: 37222.6 Da    PI: 7.3552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015721genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31084.5e-3429141199
                           EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                           f+k ltpsdv+k++rlv+pk++ae++              +g +e++  l++edesg+sW+++++y+++s++yvltkGW++Fvk+++L+
  PGSC0003DMP400015721  29 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgnnnnntnnnDGGTEKGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLD 117
                           99*****************************99999999955567999***************************************** PP

                           TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  76 egDfvvFkldgrsefelvvkvfrk 99 
                           +gD+v+F ++++++ +l+++++r+
  PGSC0003DMP400015721 118 AGDIVLFDRHRSESDRLFIGWRRR 141
                           ********98889999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-4221149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-3026141IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-2827131No hitNo description
PfamPF023625.3E-3129142IPR003340B3 DNA binding domain
SMARTSM010194.3E-2829142IPR003340B3 DNA binding domain
PROSITE profilePS5086314.69229142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSNNTHNEHD DELGQSEDKL EEIPRDHLFE KPLTPSDVGK LNRLVIPKQH AEKYFPLSGN  60
NNNNTNNNDG GTEKGLLLSF EDESGKSWRF RYSYWNSSQS YVLTKGWSRF VKEKRLDAGD  120
IVLFDRHRSE SDRLFIGWRR RNTVSASTSI STPAAVHNTA AAAVTRNMGG GGGGGGWAHV  180
YYGGHPYPSA GAGLLYQPDC LHAGGGAMPN QTTSVNNNTR RHVRLFGVNL ECEADDSSWS  240
EPPPTPDGGG SSTSSHNQDH GRSQDQASQH YYQYQFQYSK PHVTVSAAAS SYNNNHHNHK  300
STLVVTTKNQ VLLYHQTKLF AIQEYLEITP NTSKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-51251444116B3 domain-containing transcription factor NGA1
5os9_B8e-51251444116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015721
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341227.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ22e-66Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLM1AHQ90.0M1AHQ9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000230770.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.26e-65B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]