PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015853
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 171aa    MW: 18926.6 Da    PI: 3.9165
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015853genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.77.5e-167452259
                          EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                          r+YYrC+s+ gC++kk+ver+++d ++++itY+++Hnh+
  PGSC0003DMP400015853  7 RGYYRCSSSkGCSAKKQVERCSKDASLFVITYTSSHNHP 45
                          99*****998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.4E-9246IPR003657WRKY domain
SuperFamilySSF1182908.11E-13647IPR003657WRKY domain
PROSITE profilePS5081118.073747IPR003657WRKY domain
PfamPF031061.0E-12745IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-15747IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MYDFGYRGYY RCSSSKGCSA KKQVERCSKD ASLFVITYTS SHNHPGPNLP KDSVTQEQIV  60
DQHVSLEDNN DDDDDNDDTQ SCKSPLNSTT TGTSIPQGIL EENLFSDSFL GTISYDDFLP  120
LSYPQLMKFP KSELSEENDF YDELGELELP PSSTSFAGIF EEAILVDPSS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015853
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349180.11e-116PREDICTED: probable WRKY transcription factor 65 isoform X1
RefseqXP_015164982.11e-117PREDICTED: probable WRKY transcription factor 65 isoform X2
TrEMBLM1AI301e-120M1AI30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000232721e-116(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-17WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]