PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016171
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 215aa    MW: 23229.7 Da    PI: 6.3449
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016171genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-15251355
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PGSC0003DMP400016171  2 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 51
                          9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-34165IPR001471AP2/ERF domain
PROSITE profilePS5103219.137159IPR001471AP2/ERF domain
CDDcd000184.90E-27261No hitNo description
Gene3DG3DSA:3.30.730.106.6E-19259IPR001471AP2/ERF domain
PRINTSPR003672.4E-5213IPR001471AP2/ERF domain
PfamPF008476.2E-10251IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-18261IPR016177DNA-binding domain
PRINTSPR003672.4E-54161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTSAVTNFDI  60
SRYDVKRICS SSTLIAGDLA KRSSSKDSVV CPSSYEDYSS CTTSPRPILA ITNGEQLQQP  120
VDSFMDMVPL MGAAGSSSRS SSNAPSPKCP GSGEMSCDFG VGLEYPQAYY SSVQVQDHKF  180
EDGSKGNDDN SSSSGRIGNM DLVHPVPMFA LWNQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016171
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342914.11e-156PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLM1AIV01e-159M1AIV0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000237091e-160(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-41AP2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]