PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016305
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 297aa    MW: 32252.3 Da    PI: 3.9717
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016305genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-0787123339
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                           +WT++E+  ++++++   +g+W++I+r+   +Rt+kq
  PGSC0003DMP400016305  87 SWTEQEHMSFLRGIEINDKGDWRSISRHCVITRTAKQ 123
                           6***************************987899887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-683123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-685123IPR009057Homeodomain-like
CDDcd001675.46E-687123No hitNo description
PfamPF002491.0E-587123IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MNTNQTCNNS FWTKEEDKLF ENTVAINKDN NNLLEEMEEA LPGKSAGEDI LIEDINVIES  60
GYVPLPNHPE MQNQNSKADA EWRKGASWTE QEHMSFLRGI EINDKGDWRS ISRHCVITRT  120
AKQEDAEATG TSQVPHTEYI IGSAYGGSQA VPNTSNESML PRESTNAEQM IEVVGGESTD  180
HNAVVNVGSD VNVDAGSSLL PSKQSCTAAS SGTYGHPISR IGSELEALLT EPMDEDNDIT  240
TIFDVGKAPT SYPVLFDATL SGVPRYSAAE AALAQLPPFD DEGIFDPDDL FTDPMF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016305
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361808.11e-109PREDICTED: transcription factor DIVARICATA-like
RefseqXP_015170955.11e-109PREDICTED: transcription factor DIVARICATA-like
TrEMBLM1AJ500.0M1AJ50_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000239030.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-22MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]