PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016315
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 191aa    MW: 21959.8 Da    PI: 6.6704
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016315genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.92.6e-12229101128
                   NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                           g+kk Lvfy g+apkgekt+W+mheyrl
  PGSC0003DMP400016315   2 GIKKALVFYAGKAPKGEKTNWIMHEYRL 29 
                           99************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.125156IPR003441NAC domain
SuperFamilySSF1019411.44E-16156IPR003441NAC domain
PfamPF023653.5E-5229IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGIKKALVFY AGKAPKGEKT NWIMHEYRLA HVDRSARNKN NSLRLDDWVL CRIYNKKGTT  60
EKNQLNIRKM NVEMSPAVSE GDVKPEIMPY SVSTKPSSTS YHVYNDFTYF DSSDSLPKLH  120
TDSSCSEHVP SPEFTCEKEV QSEPKVKLNE WEKTALDFPF NYTDATTSEL QSCYEMSPLQ  180
DIFMYLQKPF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-21162114171NO APICAL MERISTEM PROTEIN
1ut4_B3e-21162114171NO APICAL MERISTEM PROTEIN
1ut7_A3e-21162114171NO APICAL MERISTEM PROTEIN
1ut7_B3e-21162114171NO APICAL MERISTEM PROTEIN
3swm_A3e-21162117174NAC domain-containing protein 19
3swm_B3e-21162117174NAC domain-containing protein 19
3swm_C3e-21162117174NAC domain-containing protein 19
3swm_D3e-21162117174NAC domain-containing protein 19
3swp_A3e-21162117174NAC domain-containing protein 19
3swp_B3e-21162117174NAC domain-containing protein 19
3swp_C3e-21162117174NAC domain-containing protein 19
3swp_D3e-21162117174NAC domain-containing protein 19
4dul_A3e-21162114171NAC domain-containing protein 19
4dul_B3e-21162114171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00121DAPTransfer from AT1G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4539990.0KC453999.1 Solanum lycopersicum cultivar Ailsa Craig NAC4 domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351144.11e-140PREDICTED: NAC domain-containing protein 2-like
SwissprotQ390133e-63NAC2_ARATH; NAC domain-containing protein 2
TrEMBLM1AJ551e-141M1AJ55_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000239171e-139(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-65NAC family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Florentin A,Damri M,Grafi G
    Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization.
    Dev. Dyn., 2013. 242(10): p. 1121-33
    [PMID:23798027]
  3. Jensen MK, et al.
    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.
    FEBS Open Bio, 2013. 3: p. 321-7
    [PMID:23951554]
  4. Wang YX
    Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress.
    Mol. Biol. Rep., 2013. 40(11): p. 6451-8
    [PMID:24057250]
  5. Yang X, et al.
    Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis.
    Plant Cell Rep., 2015. 34(6): p. 943-58
    [PMID:25666276]
  6. Du Q,Wang H
    The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation.
    Plant Signal Behav, 2015. 10(10): p. e1078955
    [PMID:26340415]
  7. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  8. Liu Y,Sun J,Wu Y
    Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice.
    J. Plant Res., 2016. 129(5): p. 955-962
    [PMID:27216423]
  9. Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR
    Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining.
    PLoS ONE, 2016. 11(9): p. e0162327
    [PMID:27618630]
  10. Zhao J,Missihoun TD,Bartels D
    The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana.
    Planta, 2018. 248(4): p. 1017-1027
    [PMID:30027414]