PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016377
Common NameLOC102598733
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 348aa    MW: 39525.6 Da    PI: 9.2431
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016377genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.84.8e-082072421550
                           HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  15 eAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                            +A rsR RK++ i+eLe+ v++L+ae ++L  ele
  PGSC0003DMP400016377 207 QSAHRSRVRKLQHIAELERTVQALQAEGSELSAELE 242
                           69******************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147031.29E-13198249No hitNo description
SMARTSM003382.2E-5198257IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.5E-8207251No hitNo description
SuperFamilySSF579591.19E-6207251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MESLNGSSSL KNFSFSNKQS IMDSTSPFLQ SYVDSNMDGS KGKAKPTEGS SHHHRCNSES  60
FLIEEQPSWL DDLLNEPPET TTVVHKGHRR SASDTFAYLG AAAERLNTWE EPKNKNVNIG  120
ASWGSVNYVS YKDLSAVPYE TKPNSSHEQK FNKAAQELNG APSVSHEKHN MREINNSKNQ  180
EGSSERSNNA QAKHSMSKAD AKRAKQQSAH RSRVRKLQHI AELERTVQAL QAEGSELSAE  240
LEFVDQQNII LSMENRALRQ RLDSLSQEQL IKHLEQEMLE RELTRLQTMY QMQRQQMQQQ  300
HQQPQQQNHS KHRRNKSRDL EAQFANLSIK NNEANSSRVQ VTGSVRM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016377
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350327.10.0PREDICTED: uncharacterized protein At4g06598-like
TrEMBLM1AJA30.0M1AJA3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000240030.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114452023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.29e-58bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]