PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016389
Common NameLOC102591142
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family BBR-BPC
Protein Properties Length: 220aa    MW: 23994.3 Da    PI: 10.3112
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016389genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind201.77.9e-6255219133301
             GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrq 221
                            +++  ++++ +k+kk++ k+ r+++    k++++++ks++skk++ ++++     +  k+ + v    + D s+lP+P CsCtG++r+
  PGSC0003DMP400016389  55 VKFK-AKSQKMKKNKKTSMKGIRETVSELLKEERPENKSSASKKTKGEARCG--EATVTKNPNPVYGRANADFSGLPPPFCSCTGVSRR 140
                           2222.22233333333344444555555555555555555555555555543..77889999999************************ PP

             GAGA_bind 222 CYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           CYk G GGWqS+CCtt++SvyPLP ++ ++g R agrKmS+ga++klL  La+eG+dlsnpvDLkdhWAkHG nkf+t++
  PGSC0003DMP400016389 141 CYKCG-GGWQSSCCTTSLSVYPLPFNPSKPGNRKAGRKMSNGAYNKLLCTLATEGHDLSNPVDLKDHWAKHGSNKFITLK 219
                           ***99.9***********************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012267.5E-381219IPR010409GAGA-binding transcriptional activator
PfamPF062171.8E-5535219IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MASQVNHKEG TFDSHFPWIH RDNFPPATKF GSESKPCAAV PIRSVAPTGE QNVDVKFKAK  60
SQKMKKNKKT SMKGIRETVS ELLKEERPEN KSSASKKTKG EARCGEATVT KNPNPVYGRA  120
NADFSGLPPP FCSCTGVSRR CYKCGGGWQS SCCTTSLSVY PLPFNPSKPG NRKAGRKMSN  180
GAYNKLLCTL ATEGHDLSNP VDLKDHWAKH GSNKFITLK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016389
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0095210.0AP009521.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0068N03, complete sequence.
GenBankAP0102570.0AP010257.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0172P19, complete sequence.
GenBankAP0107980.0AP010798.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0011I05, complete sequence.
GenBankFJ9823060.0FJ982306.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds.
GenBankFJ9823070.0FJ982307.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) gene, complete cds.
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352921.11e-163PREDICTED: protein BASIC PENTACYSTEINE7-like
SwissprotO822862e-47BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLM1AJB51e-162M1AJB5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000240191e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137141415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.44e-49basic pentacysteine 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]