PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016415
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 66aa    MW: 7429.51 Da    PI: 5.5808
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016415genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like414.2e-132650125
               G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                          kprlrWt +LH+rFv+av++LGG++
  PGSC0003DMP400016415 26 KPRLRWTADLHDRFVDAVTKLGGPD 50
                          79*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-112251IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-92651IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MDRMYNGGGD MGYGYENGVV MTRDPKPRLR WTADLHDRFV DAVTKLGGPD SELLFFFCSV  60
FLHLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016415
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092622e-86AP009262.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0006A17, complete sequence.
GenBankAY3031702e-86AY303170.1 Solanum bulbocastanum chromosome 8 clone UW3A14, complete sequence.
GenBankAY3031712e-86AY303171.1 Solanum bulbocastanum chromosome 8 clone UW177O13, complete sequence.
GenBankHG9754472e-86HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755202e-86HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245962.17e-33myb family transcription factor PHL11 isoform X2
RefseqXP_010325600.17e-33myb family transcription factor PHL11 isoform X1
RefseqXP_015083593.17e-33myb family transcription factor PHL11 isoform X1
RefseqXP_015083594.17e-33myb family transcription factor PHL11 isoform X2
SwissprotC0SVS42e-17PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLM1AJD71e-40M1AJD7_SOLTU; Uncharacterized protein
STRINGSolyc08g076010.2.11e-31(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.17e-17G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]