PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016501
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 516aa    MW: 53838.5 Da    PI: 9.9783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016501genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07174220146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 
                           r++WT  Ed  l+ av++ G g+W+ I +t     Rt+ q+  rw +
  PGSC0003DMP400016501 174 RKAWTGAEDMELITAVQKCGEGNWANILKTDFkGDRTASQLSQRWAT 220
                           789*************************9844469999999999966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.101169226IPR017930Myb domain
SuperFamilySSF466893.09E-12170224IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-13170225IPR009057Homeodomain-like
SMARTSM007177.3E-7173224IPR001005SANT/Myb domain
PfamPF002497.8E-6174220IPR001005SANT/Myb domain
CDDcd116602.27E-14175223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MLTLLQEVGQ VNGSKIDWND LVKKTATGIT SAREYQMVWR HLAYRKVLLD KFDDDAQPMD  60
DDSDLEYELE SFPPVSSEAS TEAAAWGKVF IASGALHDSN MSNGSTVEAS LTIQIPNGQT  120
SGTVAANSLQ GISAYGTKLT VPVTVQTQPM PSVSAAEGVD TSGPASANLP RRRRKAWTGA  180
EDMELITAVQ KCGEGNWANI LKTDFKGDRT ASQLSQRWAT IRKQHVMMVG NGSHLSEAQL  240
ATRHAVSMAF GDNVRAACPI SPNAGPNSGS GPSNSSHFAA AANVASAGPQ SKHQQDLVPS  300
KPIIPKIPLP KPAINPDPMV KAAAMAASSR VATHSGAAAS LQKAAQSKKG VHIMPGGTPA  360
VKSSVPGSFN GLPSNVHFIR TGLVSCPADP SNTSQSGTQQ LQAPRSVSPA VQPKPTTVPS  420
RTNASSGVRS APSSYPTTVL EVKSKAAVSQ ENQIAVLSNT RSEKTQVIRA ASLANTPQQQ  480
VPKDQTFGNL LSGKVDGQTS VLGDTVKKLG GESKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016501
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338055.10.0PREDICTED: uncharacterized protein LOC102605794
TrEMBLM1AJK40.0M1AJK4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000241680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-57MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]