PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016502
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 416aa    MW: 42677.1 Da    PI: 10.8684
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016502genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-0774120146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 
                           r++WT  Ed  l+ av++ G g+W+ I +t     Rt+ q+  rw +
  PGSC0003DMP400016502  74 RKAWTGAEDMELITAVQKCGEGNWANILKTDFkGDRTASQLSQRWAT 120
                           789*************************9844469999999999966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.10169126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-1370125IPR009057Homeodomain-like
SuperFamilySSF466892.01E-1270124IPR009057Homeodomain-like
SMARTSM007177.3E-773124IPR001005SANT/Myb domain
PfamPF002495.8E-674120IPR001005SANT/Myb domain
CDDcd116601.34E-1475123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSNGSTVEAS LTIQIPNGQT SGTVAANSLQ GISAYGTKLT VPVTVQTQPM PSVSAAEGVD  60
TSGPASANLP RRRRKAWTGA EDMELITAVQ KCGEGNWANI LKTDFKGDRT ASQLSQRWAT  120
IRKQHVMMVG NGSHLSEAQL ATRHAVSMAF GDNVRAACPI SPNAGPNSGS GPSNSSHFAA  180
AANVASAGPQ SKHQQDLVPS KPIIPKIPLP KPAINPDPMV KAAAMAASSR VATHSGAAAS  240
LQKAAQSKKG VHIMPGGTPA VKSSVPGSFN GLPSNVHFIR TGLVSCPADP SNTSQSGTQQ  300
LQAPRSVSPA VQPKPTTVPS RTNASSGVRS APSSYPTTVL EVKSKAAVSQ ENQIAVLSNT  360
RSEKTQVIRA ASLANTPQQQ VPKDQTFGNL LSGKVDGQTS VLGDTVKKLG GESKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016502
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338055.10.0PREDICTED: uncharacterized protein LOC102605794
TrEMBLM1AJK40.0M1AJK4_SOLTU; Uncharacterized protein
TrEMBLM1AJK50.0M1AJK5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000241680.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.17e-31MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]