PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016517
Common NameLOC102605892
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 205aa    MW: 22750.3 Da    PI: 10.586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016517genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-103682354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          ++h  +Er+RR+riNs +++L++l P +     +K +K  +L++Av  +k+L
  PGSC0003DMP400016517 36 VTHAVAERKRRERINSHLHTLKKLFPYL-----PKKDKPRVLTEAVTQLKEL 82
                          68*************************8.....6999999***999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.19E-122490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.4463382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-83682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-73687No hitNo description
Gene3DG3DSA:4.10.280.102.5E-103790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-73988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.49E-5120190No hitNo description
Gene3DG3DSA:3.30.70.2601.6E-5120188No hitNo description
CDDcd048730.00376121185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MLSSLQGCNG FLQLVDHQKN EKSNTTKKSK SKDAAVTHAV AERKRRERIN SHLHTLKKLF  60
PYLPKKDKPR VLTEAVTQLK ELRKNVAQQL ELSSLFIPSE NDVVIINYCD NINEERTIKA  120
TICCEDRPSL NRDLSSAIRS VQGRVIKAEM ATVGGRTKAE LVVVLGKANG GEKDIGQLKR  180
ALKAVVEKRD LGFGSNVMLG RRFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14146ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016517
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4686380.0CU468638.8 S.lycopersicum DNA sequence from clone LE_HBa-272I8 on chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338133.11e-148PREDICTED: putative transcription factor bHLH107
TrEMBLM1AJM01e-147M1AJM0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000241851e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137131315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.15e-32bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]