PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016573
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 189aa    MW: 21568.1 Da    PI: 5.0072
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016573genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.61.3e-1599541128
                   NAM  41 kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                           + ePw++ +   +++   yf ++++k++++ kr +r++ +g+Wk +gk kev+++kg+l+g  k+L +  +++++k  + +W+m ey+l
  PGSC0003DMP400016573   9 DNEPWQIFEG--TNSYTRYFITPQKKQNPKWKRVSRTVGKGTWKPQGKGKEVFDNKGRLMGYVKSLKYTySKSDNKNANGEWLMTEYSL 95 
                           359****632..234477*************************************************95377888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.6571118IPR003441NAC domain
SuperFamilySSF1019411.07E-1910118IPR003441NAC domain
PfamPF023653.0E-71195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEVVNLYADN EPWQIFEGTN SYTRYFITPQ KKQNPKWKRV SRTVGKGTWK PQGKGKEVFD  60
NKGRLMGYVK SLKYTYSKSD NKNANGEWLM TEYSLYDGYL DAREIKNKGY VICKIKKKRK  120
PNDGNKNGVS DENMNDIEKL IDSSLQLEND INVEEDDVGD EVLAILDKED DGDPNVECLE  180
GHPSANII*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120KKKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348969.11e-135PREDICTED: NAC domain-containing protein 78-like
TrEMBLM1AJS01e-134M1AJS0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000242631e-135(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.11e-11NAC domain containing protein 46
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]