PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400016838

Common Name

LOC102579016

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WRKY

Protein Properties

Length: 335aa MW: 36334.3 Da PI: 10.0853

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400016838	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.5e-30	236	294	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YYrC+s gCp++k+ver+++dp ++++tY geH+h PGSC0003DMP400016838 236 ADEYSWRKYGQKPIKGSPYPRGYYRCSSVrGCPARKHVERATDDPGMLIVTYGGEHRHV 294 69***********************988**************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.6E-16	188	233	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.7E-32	224	294	IPR003657	WRKY domain
PROSITE profile	PS50811	29.712	230	293	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-26	231	293	IPR003657	WRKY domain
SMART	SM00774	1.0E-35	235	295	IPR003657	WRKY domain
Pfam	PF03106	7.6E-26	237	293	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAVDLLNYSN INEQLAIQEA ASAGLKSMDN LIRFVSFQQQ QNQTVQPDCR EITDYTVNNF 60 RKVISILNRT GHARFRRSPV QVTDDSCTAL TLSPLTTPAE EILPAVKAPV IVPVEKYQSK 120 ALTLDFTKRK VGKSMGCEAV PVASSTTSSS FMSTITGEGS VSNGKVFSSM NLPPRPPVSS 180 GKPPIAGKRC RDHDLSDEFS GRTSSSGKCH CKKRKSRVKK VIRVPAISSK TADIPADEYS 240 WRKYGQKPIK GSPYPRGYYR CSSVRGCPAR KHVERATDDP GMLIVTYGGE HRHVQTTISG 300 NVTSAGAGAG SSGERMMAFE LTGQKNGERL GLEI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	223	293	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400016838

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU056915	0.0	EU056915.1 Solanum tuberosum WRKY transcription factor 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006357046.1	0.0	PREDICTED: probable WRKY transcription factor 11
Swissprot	Q9SV15	1e-110	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	M1AKF7	0.0	M1AKF7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400024632	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3145	22	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.2	9e-89	WRKY DNA-binding protein 11

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400016838
Entrez Gene	102579016

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]