PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016848
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 210aa    MW: 25244.9 Da    PI: 9.4081
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016848genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.4e-135751898
                          --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                          +pk f+ ++ +  k  + +  +  + g++W+vk+  ++++    l++GW++F ++++L  +D++vF+++g++ef   v++f+
  PGSC0003DMP400016848  5 IPKGFL-KYlK--KYDQYEHAILRRAGKKWRVKV--NGRR----LEDGWEKFSDQHDLHLRDILVFRHEGDMEF--EVSIFN 75
                          899999.6632..345567788899*********..8888....************************999999..888775 PP
2B354.81.7e-17114199592
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            ++++ l+++ l +pk+fa+++g+ ++++++l ++de+ rsW+vkl  r ++++ ++l +GW++  +an L egD ++F+++  s+ ++
  PGSC0003DMP400016848 114 IVRPYCLSRDALLVPKEFASRNGLFNTKERDLLVRDERQRSWNVKL--RSYGDSvVYLIDGWNKIRDANCLMEGDCIMFEVVT-SGNKP 199
                           5678999***************99999999****************..888777789999********************765.45444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.478177IPR003340B3 DNA binding domain
SMARTSM010197.9E-5177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-15477IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-14477IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-9575No hitNo description
PfamPF023625.8E-10575IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17104204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-18107203IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.731110206IPR003340B3 DNA binding domain
SMARTSM010197.5E-14111206IPR003340B3 DNA binding domain
PfamPF023621.0E-14114201IPR003340B3 DNA binding domain
CDDcd100175.91E-11118191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MLQKIPKGFL KYLKKYDQYE HAILRRAGKK WRVKVNGRRL EDGWEKFSDQ HDLHLRDILV  60
FRHEGDMEFE VSIFNLNQQC EREYEYKYEY EYESKDKPNH NIKSSRKASH FVCIVRPYCL  120
SRDALLVPKE FASRNGLFNT KERDLLVRDE RQRSWNVKLR SYGDSVVYLI DGWNKIRDAN  180
CLMEGDCIMF EVVTSGNKPI WKFKRMTEQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016848
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436844.12e-80PREDICTED: B3 domain-containing protein REM17-like
TrEMBLM1AKG61e-154M1AKG6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246481e-155(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-28B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]