PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016855
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 162aa    MW: 18957.4 Da    PI: 5.0639
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016855genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.4e-1661143589
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                            +++++  ++ l++p  fa+++g   ++ ++++l+de+ rsW v+l     s+  + +  GW++F +an++++gD+  F+l+++++
  PGSC0003DMP400016855  61 IIKPYSIFKHFLYIPLAFAKSNGWM-NRRFEMILMDEQQRSWPVRL--GPVSDDhIGIHIGWQKFKEANDVQVGDIYRFELINNEK 143
                           45677777788***********654.4679****************..55555548899**********************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1952151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1952151IPR015300DNA-binding pseudobarrel domain
CDDcd100172.93E-1656151No hitNo description
PROSITE profilePS5086312.49257152IPR003340B3 DNA binding domain
SMARTSM010194.3E-1258153IPR003340B3 DNA binding domain
PfamPF023622.0E-1461147IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEFEVSVFDS SHCDREYAEY LQEEGEGGRA RTVEEISKEF EFKVLPASIS ANDASPHFIS  60
IIKPYSIFKH FLYIPLAFAK SNGWMNRRFE MILMDEQQRS WPVRLGPVSD DHIGIHIGWQ  120
KFKEANDVQV GDIYRFELIN NEKIPVAYFH REYFITSLYF S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016855
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-130HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168733.19e-74PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_015168734.19e-74PREDICTED: B3 domain-containing protein REM14-like isoform X2
RefseqXP_015168735.11e-73PREDICTED: B3 domain-containing protein REM14-like isoform X3
RefseqXP_015168736.11e-74PREDICTED: B3 domain-containing protein REM10-like isoform X5
RefseqXP_015168737.11e-74PREDICTED: B3 domain-containing protein REM10-like isoform X6
TrEMBLM1AKG81e-116M1AKG8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246737e-73(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.19e-16B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]