PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016865
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 162aa    MW: 18205.9 Da    PI: 10.2819
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016865genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-1756134587
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           +++++++++++l+lp +f++++g+  +   +++l de+ rsW+v l   +++ ++ +++GW +F +ang+++gD+  F+l+++
  PGSC0003DMP400016865  56 TIKPYTFTKALLYLPMDFVKSNGLMIR--SEMILIDEKQRSWSVWL--GRTGHQFGIKRGWTQFRNANGIQVGDTYKFELINN 134
                           5689******************88844..48***************..*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-2145139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2148140IPR015300DNA-binding pseudobarrel domain
CDDcd100174.34E-1551142No hitNo description
PROSITE profilePS5086312.98552145IPR003340B3 DNA binding domain
SMARTSM010192.1E-1553148IPR003340B3 DNA binding domain
PfamPF023622.1E-1556135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEGDYMTFEV VANGENPIWK FHPITRLRHK KSDVTTPISQ TPASTSADAN PHFISTIKPY  60
TFTKALLYLP MDFVKSNGLM IRSEMILIDE KQRSWSVWLG RTGHQFGIKR GWTQFRNANG  120
IQVGDTYKFE LINNGTIPIA HVNILGVKDA NRQASQKPLT G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016865
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-108HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168739.11e-114PREDICTED: B3 domain-containing protein REM14-like
TrEMBLM1AKH61e-117M1AKH6_SOLTU; Uncharacterized protein
TrEMBLM1AKH81e-115M1AKH8_SOLTU; Uncharacterized protein
STRINGSolyc08g006220.2.11e-62(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-21B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]