PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016866
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 104aa    MW: 11866.6 Da    PI: 10.3177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016866genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-1510761787
                          E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                          +lp +f++++g+  +   +++l de+ rsW+v l   +++ ++ +++GW +F +ang+++gD+  F+l+++
  PGSC0003DMP400016866 10 YLPMDFVKSNGLMIR--SEMILIDEKQRSWSVWL--GRTGHQFGIKRGWTQFRNANGIQVGDTYKFELINN 76
                          89********88844..48***************..*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.492187IPR003340B3 DNA binding domain
SMARTSM010194.3E-9790IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-16881IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-18883IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-13977IPR003340B3 DNA binding domain
CDDcd100173.28E-131084No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MLNWDKFEQY LPMDFVKSNG LMIRSEMILI DEKQRSWSVW LGRTGHQFGI KRGWTQFRNA  60
NGIQVGDTYK FELINNGTIP IAHVNILGVK DANRQASQKP LTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016866
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-119HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168739.11e-60PREDICTED: B3 domain-containing protein REM14-like
TrEMBLM1AKH79e-71M1AKH7_SOLTU; Uncharacterized protein
STRINGSolyc08g006230.2.18e-48(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-15B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]