PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016919
Common NameLOC102594971
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 136aa    MW: 15471.7 Da    PI: 9.7996
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016919genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.84.9e-083341647
                          HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  PGSC0003DMP400016919  3 LEKLGKGDWRGISRKFVTTRTPTQVASHAQKY 34
                          689****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.15139IPR017930Myb domain
TIGRFAMsTIGR015577.5E-10238IPR006447Myb domain, plants
CDDcd001670.00167235No hitNo description
SuperFamilySSF466891.79E-8238IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-5234IPR009057Homeodomain-like
PfamPF002491.7E-5334IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MGLEKLGKGD WRGISRKFVT TRTPTQVASH AQKYFLRQYS THLNKKKRRS SLFDMERRKN  60
KMEESKEEYG NSTSPISMMD EEIALTTKDT LIWSSYYESP LNLELSLAAA NTFLIGTIPV  120
NSKPDQLPLN CIYAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14448KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016919
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754463e-69HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755193e-69HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345334.17e-97PREDICTED: myb-like protein J
TrEMBLM1AKK53e-96M1AKK5_SOLTU; Uncharacterized protein
TrEMBLM1AKK62e-95M1AKK6_SOLTU; Uncharacterized protein
STRINGXP_009773328.13e-34(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.15e-26MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]