PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016920
Common NameLOC102594971
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 259aa    MW: 28655.4 Da    PI: 9.2062
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016920genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-14114157447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           WT+eE+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  PGSC0003DMP400016920 114 WTEEEHRRFLMGLEKLGKGDWRGISRKFVTTRTPTQVASHAQKY 157
                           *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.073106162IPR017930Myb domain
SuperFamilySSF466896.73E-17108161IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-18110161IPR006447Myb domain, plants
SMARTSM007172.1E-10110160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-11112157IPR009057Homeodomain-like
CDDcd001674.95E-9114158No hitNo description
PfamPF002491.1E-11114157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCST FKLGASASFV GGLRLFGVQL IDISSSSSAS SSSSSSYDIH  60
LKKSLSLDCM SSPQVSSSSS LVTLNEKSTT CTNGDYLSDC LLGQPQERRK GVGWTEEEHR  120
RFLMGLEKLG KGDWRGISRK FVTTRTPTQV ASHAQKYFLR QYSTHLNKKK RRSSLFDMER  180
RKNKMEESKE EYGNSTSPIS MMDEEIALTT KDTLIWSSYY ESPLNLELSL AAANTFLIGT  240
IPVNSKPDQL PLNCIYAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167171KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-117HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345334.10.0PREDICTED: myb-like protein J
TrEMBLM1AKK60.0M1AKK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000247561e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-52MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]