PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017709
Common NameLOC102591487
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 314aa    MW: 34914.2 Da    PI: 6.3921
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017709genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.44.4e-4271061100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+lrrkC+++Cv+apyfp +qp kf nvhk+FGasnv kll++l+  +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+q
  PGSC0003DMP400017709   7 PCAACKFLRRKCTQECVFAPYFPPDQPLKFSNVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQQKLRQ 95 
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           ++ +l  +k+e
  PGSC0003DMP400017709  96 VQDDLLNAKKE 106
                           ****9888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.3986107IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-427103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSSTNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPLKFSNVH KVFGASNVAK LLNELNAAQR  60
EDAVNSLAYE AEYRLRDPVY GCVGLISLLQ QKLRQVQDDL LNAKKELSTY IGPSAMIPII  120
NLQPPGFFQP QQHMNAPSSS TMMPFNMNPM SGMSTVVPHG GQLLIRDPQQ QQQLLQQPIQ  180
VQQFITAMAA KEQRDQQEML KFYEQQEQQS SQQEDVVRFN GGFDSTGSVT ATGFHQMSLS  240
VPPSLVLAGT YENPYNLVPP HQQSQPDHSL SYQQQVHLQS QQQLQPPQPP ETPRQQQRAN  300
SEEEGRGSGG PSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-4731107114LOB family transfactor Ramosa2.1
5ly0_B9e-4731107114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017709
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265170.0AC226517.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0056J19, complete sequence.
GenBankAC2327710.0AC232771.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0115F06, complete sequence.
GenBankAC2327740.0AC232774.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0056J10, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338222.10.0PREDICTED: LOB domain-containing protein 36
SwissprotQ9FKZ35e-77LBD36_ARATH; LOB domain-containing protein 36
TrEMBLM1AME70.0M1AME7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000259590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-74ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  3. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]