PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017770
Common NameLOC102582906
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 239aa    MW: 26994.4 Da    PI: 9.8953
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017770genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.51.4e-39611872132
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgka 90 
                           ++kkdrhski T++g RdRRvRls+ +a++fFdLqd+LG+dk+skt++WL++++k ai +l ++ s+++   ++ ss +++    ++++
  PGSC0003DMP400017770  61 PVKKDRHSKILTSQGHRDRRVRLSLGVARKFFDLQDMLGYDKPSKTLDWLFTKSKLAIEDLINDVSKKS-ILDTPSSINNN----NNSE 144
                           68**************************************************************44444.33323333333....3466 PP

                   TCP  91 aksaa.kskksqksaasalnlakesrakarararertrekmri 132
                           + +++  +  + ++ +++ +  ++srakarararert +k  +
  PGSC0003DMP400017770 145 CDEDMiVPLAAVDELTKKAKQERDSRAKARARARERTIKKIWT 187
                           67777566666666666667777**************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-3662146IPR005333Transcription factor, TCP
PROSITE profilePS5136933.68363121IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.497167184IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MFPFGNSSNG NPILHSSFLS NQILLHQHDL PTHHHYLGAP NGHLIDSYAT NNLVINKSKK  60
PVKKDRHSKI LTSQGHRDRR VRLSLGVARK FFDLQDMLGY DKPSKTLDWL FTKSKLAIED  120
LINDVSKKSI LDTPSSINNN NNSECDEDMI VPLAAVDELT KKAKQERDSR AKARARARER  180
TIKKIWTQIA PNREATASHY NNWNHDNVNP TIMDASTICC TSSLQVQKAW DSYHGSQI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963250.0GQ496325.1 Solanum lycopersicum TCP transcription factor 7 (TCP7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338278.11e-178PREDICTED: transcription factor DICHOTOMA-like
TrEMBLM1AMI91e-177M1AMI9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000260371e-178(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-28TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]