PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017798
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family DBB
Protein Properties Length: 329aa    MW: 36181.1 Da    PI: 4.8735
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017798genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.6e-071959438
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          r+C+ +++   + +C+ ++ +lC+dC   +H        H+
  PGSC0003DMP400017798 19 RVCDSCHSATCTVYCRADSAYLCADCDARIHAAslmasrHE 59
                          79*****************************6566666676 PP
2zf-B_box30.76.6e-1061106342
              zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                            ++C+ +e+ ++ + C+ +   lC++C + +H+       H +vp+
  PGSC0003DMP400017798  61 VWVCEACERAPAAFLCKADAASLCASCDVDIHSAnplarrHHRVPI 106
                           689*****************************66899999877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.9831663IPR000315B-box-type zinc finger
SMARTSM003364.5E-91663IPR000315B-box-type zinc finger
CDDcd000218.17E-91963No hitNo description
PROSITE profilePS5011911.06459106IPR000315B-box-type zinc finger
PfamPF006437.4E-860106IPR000315B-box-type zinc finger
CDDcd000212.50E-862106No hitNo description
SMARTSM003363.4E-964106IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MLKKEKSGGF DGSSNNWARV CDSCHSATCT VYCRADSAYL CADCDARIHA ASLMASRHER  60
VWVCEACERA PAAFLCKADA ASLCASCDVD IHSANPLARR HHRVPIMPIP GTLYGPPAVH  120
TVSGGSMMIG GTTGEGTEDD GFLSLTQDAD DTTIDEEDEN EAASWLLLNP PVKNNNKNNI  180
NNNNNNQNNN YGMLFGGEVV DEYLDLAEYG GDSQFNDQYS VNQQQQHYSV PQKSYVEDSV  240
VPVQNGQRKS LILYHQPQQQ QQQQQQSHHL NFQLGMEYDN SNTGYGYPAS LSHSVSFLHF  300
IDIPHFVSCL TKLLLCATSV LLTLLFSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017798
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4997540.0DQ499754.3 Solanum tuberosum cultivar Early Rose CONSTANS mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161657.10.0PREDICTED: CONSTANS isoform X1
TrEMBLM1AML60.0M1AML6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000260650.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.27e-58B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]