PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017857
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 227aa    MW: 26592.1 Da    PI: 7.7203
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017857genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-1626118199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffk++   + +++ rl++p kf++ ++++++   + +l+ +sg++W v++ +r   + yv+ +GW+ Fvk++ L++ D++vFk+dg s 
  PGSC0003DMP400017857  26 FFKIM--INDFRR-RLRIPQKFVTCFKNSHKLLGQKILTGPSGNTWLVEV-VRTEEDDYVFCNGWEVFVKDHCLEDADMLVFKMDGFSA 110
                           67777..555555.6*******96665555555677889***********.5777777*************************988788 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f   v++f++
  PGSC0003DMP400017857 111 F--DVMIFDA 118
                           8..8988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-2022121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-2022124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.63323119IPR003340B3 DNA binding domain
SMARTSM010192.0E-1126119IPR003340B3 DNA binding domain
PfamPF023623.3E-1426118IPR003340B3 DNA binding domain
CDDcd100172.07E-1726117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MATICERCKV LEKQKYWEEF DKQHKFFKIM INDFRRRLRI PQKFVTCFKN SHKLLGQKIL  60
TGPSGNTWLV EVVRTEEDDY VFCNGWEVFV KDHCLEDADM LVFKMDGFSA FDVMIFDASA  120
CEKETTFFVK KNRNPCKHPD EVTDEHTTEQ QSSEDETSNE DDDTDEEENI QEPTRGRKSS  180
RGKQYQFQSL QSSKGKKMKK ILVAKQDNRK RKCTPMSSRK KNVEPG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017857
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338757.11e-167PREDICTED: B3 domain-containing protein REM16-like
TrEMBLM1AMQ51e-168M1AMQ5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000261461e-168(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-26B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]