PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017940
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 152aa    MW: 16830 Da    PI: 11.0705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017940genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19655255
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr ++ +grW AeIrd       r r++lg+f+t+eeAa+a++aa++ l+g
  PGSC0003DMP400017940  6 SYRGVRNRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDAAARWLRG 55
                          69****777.**********32....25**********************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.14E-18564No hitNo description
SMARTSM003801.4E-30669IPR001471AP2/ERF domain
PfamPF008473.2E-13655IPR001471AP2/ERF domain
PROSITE profilePS5103221.733663IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-29663IPR001471AP2/ERF domain
PRINTSPR003672.7E-10718IPR001471AP2/ERF domain
PRINTSPR003672.7E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
PSVEKSYRGV RNRPWGRWSA EIRDRIGRCR HWLGTFDTPE EAARAYDAAA RWLRGSKART  60
NFQIPPIVPL PTSPTSTSSS SNSSREMKMK NGGAVANNQR KCSVVTSTAH LFSSNEFNKK  120
VSVTVELDLK LGFGRKLGGY WVYGAGSWFM G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-167621571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9062420.0GU906242.1 Solanum tuberosum clone BAC BC206B16 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163987.19e-81PREDICTED: ethylene-responsive transcription factor ERF084-like
TrEMBLM1AMY11e-107M1AMY1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000262691e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115522225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-22ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]