PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018367
Common NameLOC102596640
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 191aa    MW: 21599.1 Da    PI: 9.6063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018367genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.3e-132265654
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                           ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  PGSC0003DMP400018367 22 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 65
                          589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6431665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-151974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-132271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.22E-52370No hitNo description
PfamPF000101.8E-102365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-162383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.97E-4116157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGNVGEKKNK IRKVEGQPSK NLMAERRRRK RLNDRLSMLR SIVPKISKMD RTSILGDAID  60
YMKELLEKIH TLREDDNVKD EIKDIKFVGN FKELKPNEAL VKKPPKFEVE RRNEDTRIEI  120
CCSAKPGLLL STVSTLEALG LDVQQCVISC FSDFSLQASC SEAREHRTIL SGEDVKQTLF  180
KTAGFGGRCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-131787576Transcription factor MYC2
5gnj_B2e-131787576Transcription factor MYC2
5gnj_E2e-131787576Transcription factor MYC2
5gnj_F2e-131787576Transcription factor MYC2
5gnj_G2e-131787576Transcription factor MYC2
5gnj_I2e-131787576Transcription factor MYC2
5gnj_M2e-131787576Transcription factor MYC2
5gnj_N2e-131787576Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12431ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018367
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754414e-81HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755144e-81HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346887.11e-135PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL13e-82BH093_ARATH; Transcription factor bHLH93
TrEMBLM1ANW61e-135M1ANW6_SOLTU; Uncharacterized protein
TrEMBLM1ANW71e-134M1ANW7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000269371e-134(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-84beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  5. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]