PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400018388

Common Name

LOC102594542

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 28455.1 Da PI: 8.7179

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400018388	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.4e-18	117	171	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++tk q Lee F+k+++++ +++++LA+kl++ rqV vWFqNrRa+ k PGSC0003DMP400018388 117 KKKLRLTKVQSALLEESFKKQSTLNPKQKQHLARKLNVRPRQVEVWFQNRRARTK 171 677899***********************************************98 PP
2	HD-ZIP_I/II	117.5	7.5e-38	117	205	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k q++lLEesF+++++L+p++K++lar+L+++prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en++L ke +eL+ PGSC0003DMP400018388 117 KKKLRLTKVQSALLEESFKKQSTLNPKQKQHLARKLNVRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRKLYKELQELK- 204 59*************************************************************************************9. PP HD-ZIP_I/II 90 e 90 + PGSC0003DMP400018388 205 A 205 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.21E-17	106	174	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-17	108	174	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	113	173	IPR001356	Homeobox domain
SMART	SM00389	4.1E-14	115	177	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-15	117	171	IPR001356	Homeobox domain
CDD	cd00086	2.27E-15	117	174	No hit	No description
PROSITE pattern	PS00027	0	148	171	IPR017970	Homeobox, conserved site
SMART	SM00340	2.7E-23	173	216	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	3.4E-9	173	207	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDSTCDNIYS SAGLDLGLGF SSMGNQTSKK HGQVAAVKFD LGFEPSLNLS LSSGDHQMVD 60 LKTENKDQLS VASSYSNGSV KRERDIGSEV TEVERVISCR VNHDEDYYED DDASNGKKKL 120 RLTKVQSALL EESFKKQSTL NPKQKQHLAR KLNVRPRQVE VWFQNRRART KLKQTEVDCE 180 FLKKCCETLT DENRKLYKEL QELKALKVGQ PLYMKLPAAA TLTVCPSCER AGAAQNSTKP 240 HHRYGSFTNP SAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	173	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400018388

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006346880.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	2e-76	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	M1ANY1	0.0	M1ANY1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400026968	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	6e-79	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400018388
Entrez Gene	102594542

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]