PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018618
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 236aa    MW: 27571.7 Da    PI: 8.7258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018618genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.5e-1166118155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           +r+ h  +Er RR+++ + +++Lr++lP  +    ++K s  +  ++Av+YIk+L+
  PGSC0003DMP400018618  66 KRVLHRDVERHRRQEMSNLYATLRSHLPYeS---IKGKRSLPDDMQEAVNYIKNLE 118
                           7999*************************66...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.53E-763122No hitNo description
SuperFamilySSF474591.01E-1264130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.5165117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-866118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-866132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00271123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDCLSEIFSS KKIKDHDQQQ LIQIPSTPCQ PHHQDLATND PNYKRKRSIS DHKERDSLTR  60
KNSVQKRVLH RDVERHRRQE MSNLYATLRS HLPYESIKGK RSLPDDMQEA VNYIKNLENN  120
IKELEIKRKK LEDLALCSSK EDKHFGDYVT INLCDCGVEI LINEKVPLSR VLEELVKRQL  180
NVVNCVSTKV NERLLHRIQL EVYVCMTISF KNLNSLIDHV LIYNMFLTNK FNVCG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018618
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-173HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350425.11e-144PREDICTED: transcription factor bHLH118-like
TrEMBLM1APG91e-171M1APG9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000272931e-171(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-24bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]