PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018674
Common NameLOC102584586
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 209aa    MW: 23241.4 Da    PI: 8.1959
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018674genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-303997259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp+kk+ver+++dp+v++itY+++Hnh+
  PGSC0003DMP400018674 39 SDSCTWRKYGQKPIKGSPYPRGYYRCSSSkGCPAKKQVERCHHDPNVLIITYSSDHNHP 97
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-323299IPR003657WRKY domain
PROSITE profilePS5081130.3773399IPR003657WRKY domain
SuperFamilySSF1182908.11E-273499IPR003657WRKY domain
SMARTSM007743.0E-353898IPR003657WRKY domain
PfamPF031062.3E-264097IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSLPRKLSKK GAKKRVISVP IKDCDISRSN YKGDIYPPSD SCTWRKYGQK PIKGSPYPRG  60
YYRCSSSKGC PAKKQVERCH HDPNVLIITY SSDHNHPLPA ATTKHRHPTT TSASTSTDQL  120
AVFTYQPERD FIMAEVGAGE LLGCFSYVGP TLLEYCTSPT MVGSTWVDDD VAFMLPIGEE  180
DQSLYGDLGE LPECSMIFRR YNRSVDSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-201499679Disease resistance protein RRS1
5w3x_D4e-201499679Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018674
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-173HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364097.11e-155PREDICTED: probable WRKY transcription factor 65
TrEMBLM1APL51e-154M1APL5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000273781e-154(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74682232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-56WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]