PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018713
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 243aa    MW: 27600.2 Da    PI: 10.0719
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018713genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57366.46.5e-2110101297
                DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                           lf+++ws+eDei+lL G+i+fk++t  ++ +++ +f  f+  s+ ++ +  ql eKirr++ K++k   +     +ps +  h+ ++f+
  PGSC0003DMP400018713  10 LFSKVWSDEDEISLLTGIIKFKEQTAREVAQNMAEFRAFILPSLTLQPTPVQLREKIRRIRLKYEKTLVT----GNPSNTDLHQVQVFQ 94 
                           699***************************************************************9999....778999********* PP

                DUF573  91 lskkiWg 97 
                           l++kiW 
  PGSC0003DMP400018713  95 LCQKIWT 101
                           ******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.8E-2111100IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMKLKSKPPL FSKVWSDEDE ISLLTGIIKF KEQTAREVAQ NMAEFRAFIL PSLTLQPTPV  60
QLREKIRRIR LKYEKTLVTG NPSNTDLHQV QVFQLCQKIW TQPPNSNSLL LKEKHNIPEN  120
DLQVKEKHNI PENGLQVKEK HNIPENGQPE KQNLLVKEKK HNIRPIQQHK IIPDSGLDGK  180
TMEDLLKRLA KDVELVVNSK ACLQGNSNEV GIRVLDIGLE SMKLGIKLGK LVHEKATSPE  240
LV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018713
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-92HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354969.21e-175PREDICTED: uncharacterized protein LOC102600510
TrEMBLM1APP41e-174M1APP4_SOLTU; Uncharacterized protein
TrEMBLM1APP51e-173M1APP5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000274401e-174(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.15e-14DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]