PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018714
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 353aa    MW: 39997.8 Da    PI: 8.4466
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018714genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57365.31.4e-2070161297
                DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                           lf+++ws+eDei+lL G+i+fk++t  ++ +++ +f  f+  s+ ++ +  ql eKirr++ K++k   +     +ps +  h+ ++f+
  PGSC0003DMP400018714  70 LFSKVWSDEDEISLLTGIIKFKEQTAREVAQNMAEFRAFILPSLTLQPTPVQLREKIRRIRLKYEKTLVT----GNPSNTDLHQVQVFQ 154
                           699***************************************************************9999....778999********* PP

                DUF573  91 lskkiWg 97 
                           l++kiW 
  PGSC0003DMP400018714 155 LCQKIWT 161
                           ******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-2071160IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAENSSTDSG NCSVEFVREE EEIVSKKRKN KDVDVTRFLY NDTPSDGYDE EKTPPPKAKR  60
MMKLKSKPPL FSKVWSDEDE ISLLTGIIKF KEQTAREVAQ NMAEFRAFIL PSLTLQPTPV  120
QLREKIRRIR LKYEKTLVTG NPSNTDLHQV QVFQLCQKIW TQPPNSNSLL LKEKHNIPEN  180
DLQVKEKHNI PENGLQVKEK HNIPENGQPE KQNLLVKEKK HNIRPIQQHK IIPDSGLDGK  240
TMEDLLKRLA KDVELVVNSK ACLQGNSNEV GIRVLDIGLE SMKLGIKLGK LVHEKATSPE  300
LQDSPVLREQ VVLRAYLEAK IEHAQLLLNA YDGLIKDHSN EAQSSSVSAI KD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018714
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-146HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354969.20.0PREDICTED: uncharacterized protein LOC102600510
TrEMBLM1APP50.0M1APP5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000274400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138051214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-13DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]