PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018858
Common NameLOC102599396
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 351aa    MW: 41234.2 Da    PI: 5.0297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018858genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.61e-17591193
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                          f+k++  s   + +rl +p  f+  + ++++ +k++ l+d+ g+ W + +  +k +++++++ GW++F ++n +++gDf++F +dg++ f 
  PGSC0003DMP400018858  5 FVKIF--SPEKSGKRLKIPTCFT-YY-KNEKLPKKIYLRDRFGNMWPIGV--NKIGEKFYFQYGWEKFIEDNTVEVGDFLIFDYDGNKIFD 89
                          78888..66677778*****998.44.456799*****************..*********************************998884 PP

                          .E CS
                    B3 92 lv 93
                          ++
  PGSC0003DMP400018858 90 FK 91
                          44 PP
2B331.33.5e-102543361094
                           HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                    B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                           + ++++l++p + +++++++   +  +t++d+ gr++  kl+ +k  gr++l +GW++ ++ n ++ +D ++ ++++  +++ l++
  PGSC0003DMP400018858 254 SKRRDQLYVPVDVVKDYKLE--LPSSMTIRDSVGREFVTKLKKWKD-GRIWLVGGWRSLCRWNLVEKNDHCICEFVRGkRNKDLHL 336
                           567899***********988..55569999***********87777.5899*********************99775434444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-18396IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.366396IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-18598IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-12586No hitNo description
PfamPF023623.0E-15590IPR003340B3 DNA binding domain
SMARTSM010192.6E-11596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-16241341IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-17241339IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.657245344IPR003340B3 DNA binding domain
CDDcd100173.79E-7246338No hitNo description
SMARTSM010195.3E-5248344IPR003340B3 DNA binding domain
PfamPF023621.6E-8254336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEKGFVKIFS PEKSGKRLKI PTCFTYYKNE KLPKKIYLRD RFGNMWPIGV NKIGEKFYFQ  60
YGWEKFIEDN TVEVGDFLIF DYDGNKIFDF KLLGRTKCEK KGVGGLKLTV KEEKVEEMSV  120
EHQKSADPKG KNWASDNFNS SSDDDNDVEY MGEEEEEYKE TKKVPCHAEE EEEEQEDDED  180
EEEEYEEEEE EEEEEDESEE GENQRANTLK KKESRSKAFA CKVRNRHDHF GVDIFKSGRA  240
TQPKNPYFVA KIRSKRRDQL YVPVDVVKDY KLELPSSMTI RDSVGREFVT KLKKWKDGRI  300
WLVGGWRSLC RWNLVEKNDH CICEFVRGKR NKDLHLQVQV LHEGASSIIC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-122988104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-122HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351837.10.0PREDICTED: B3 domain-containing protein At5g60140-like
TrEMBLM1AQ140.0M1AQ14_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000276730.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.12e-15B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]