PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018957
Common NameLOC107058986
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 262aa    MW: 30341.8 Da    PI: 4.57
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018957genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.8e-20116166255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  PGSC0003DMP400018957 116 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFNTAEEAAMAYDKAALRIRG 166
                           7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-31115174IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-24116176IPR016177DNA-binding domain
CDDcd000181.79E-31116175No hitNo description
PROSITE profilePS5103223.907116174IPR001471AP2/ERF domain
SMARTSM003802.5E-36116180IPR001471AP2/ERF domain
PfamPF008471.2E-14116166IPR001471AP2/ERF domain
PRINTSPR003674.1E-11117128IPR001471AP2/ERF domain
PRINTSPR003674.1E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MTTHVEKNNQ QQDQVACEEI LENVWANFIS KNDQNSQKVT NEYCCEQYWE QLPILERLPS  60
LGRWISMGAE TWEDILDGII IPPQDNKNSN DESTNKDDED VVNVEKKKMV INNTRHYRGV  120
RRRPWGKYAA EIRDSSRKGA RVWLGTFNTA EEAAMAYDKA ALRIRGPKAY LNFPYEIVAQ  180
AMGISNCPNE KEWTFSSSSQ YNSRKRVSRD WNMNENLDEI NQLPKEKKIM RSMEEDLLND  240
LDILEFEDLG SDYLDGLLSS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-28115177163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018957
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160785.10.0PREDICTED: ethylene-responsive transcription factor ERF091
TrEMBLM1AQ890.0M1AQ89_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000278390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112371823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.14e-32ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]