PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018963
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WOX
Protein Properties Length: 334aa    MW: 37050.1 Da    PI: 7.2082
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018963genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-172282257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          ++R+++ +eq+++Le+ F++   +p ++e++++ +kl    ++ +++V++WFqNr+ + k+
  PGSC0003DMP400018963 22 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 82
                          89*****************99*************************************995 PP
2Wus_type_Homeobox1123.1e-362184265
     Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                          +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq
  PGSC0003DMP400018963 21 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKQ 84
                          689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-121488IPR009057Homeodomain-like
PROSITE profilePS5007110.3821883IPR001356Homeobox domain
SMARTSM003894.9E-92087IPR001356Homeobox domain
CDDcd000863.73E-82184No hitNo description
Gene3DG3DSA:1.10.10.601.0E-62188IPR009057Homeodomain-like
PfamPF000463.5E-152282IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNSSIIQQRP PCNPEERSPE PKPRWNPRPE QIRILEAIFN SGMVNPPRDE IRKIRAKLQE  60
YGQVGDANVF YWFQNRKSRS KHKQRHLQAK AQQHQHQNNS SHQPIITSSS SSSDKSSPNS  120
LTFSIGTSNV MDLLNSPTSS VNQQNYNEFL SNEQPFFFTV QPPPVVPTHD HSTMSQGFCF  180
PDSTTFSPHS SSSSSGLFLN EWMGISQTPS NNSKKAENEK MNLQSQLMSY TVTSTASPLA  240
STTIPTIGHI QGVAVDPNDA GPTRSTVFIN DVAFEVGIGP FNVREVFGED AVLIHSSGEP  300
LITNEWGITI QPLQHGAFYY LLRTSSIAST HHV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018963
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1906630.0FJ190663.1 Solanum lycopersicum cultivar M82 COMPOUND INFLORESCENCE (S) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367197.10.0PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBLM1AQ950.0M1AQ95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000278500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.18e-40homeobox-3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]