PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019030
Common NameERF1
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 248aa    MW: 27203.9 Da    PI: 8.0396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019030genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19111161255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ +aeeAa a+++a+ +++g
  PGSC0003DMP400019030 111 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYESAEEAALAYDKAAFRMRG 161
                           7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.3E-32110170IPR001471AP2/ERF domain
PROSITE profilePS5103224.223111169IPR001471AP2/ERF domain
PfamPF008473.4E-14111161IPR001471AP2/ERF domain
SMARTSM003801.8E-37111175IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-23111171IPR016177DNA-binding domain
CDDcd000185.11E-32111170No hitNo description
PRINTSPR003671.6E-13112123IPR001471AP2/ERF domain
PRINTSPR003671.6E-13151171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MYQLPISTEL PPTFFPAEFP VYCRSSSFSS LMPCLTESWG DLPLKVNDSE DMVIYGLLQD  60
AFSIGWTPSN LTSSEVKPEP REEIEPVMST SVSPPTETAA APAALQPKGR HYRGVRQRPW  120
GKFAAEIRDP AKNGARVWLG TYESAEEAAL AYDKAAFRMR GTKALLNFPH RIGLNEPEPV  180
RVTVKRRLPE PASSSVSSAS ESGSPKRRRK GVAAKQAELE VQSRGPNVIQ VGCQMEQFPV  240
GEQLLVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-37108176270ATERF1
3gcc_A6e-37108176270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019030
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strong induction by ethylene and by wounding. {ECO:0000269|PubMed:12935902}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4929840.0EF492984.1 Solanum tuberosum Zhoujinxin ERF transcription factor (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275603.10.0ethylene-responsive transcription factor 1-like
SwissprotQ84XB31e-146ERF1_SOLLC; Ethylene-responsive transcription factor 1
TrEMBLA4ZX830.0A4ZX83_SOLTU; ERF transcription factor
STRINGPGSC0003DMT4000279320.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-58ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]