PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019513
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 187aa    MW: 20940.3 Da    PI: 4.9039
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019513genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.41.5e-07145165121
                   AP2   1 sgykGVrwdkkrgrWvAeIrd 21 
                           s+y+GV++++++grW+++I+ 
  PGSC0003DMP400019513 145 SQYRGVTFYRRTGRWESHIWL 165
                           78*****************97 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MFDLNLSFDD VPVEPISVLG EVASEKVNEL LFNQMENSGT SNSSVVNMET SSTAGDDEYF  60
SSDHRHRDGF TFAILKADKE ANNEYEGSGD RGGFVIKELF PLVNGEVGLD LPANCGDLTE  120
QRIGKTPQQR LQAKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWLVIITC VFILEQFFFV  180
VSSQAQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019513
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-116HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339057.11e-116PREDICTED: ethylene-responsive transcription factor RAP2-7-like
TrEMBLM1ARJ31e-135M1ARJ3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000287062e-89(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.15e-18target of early activation tagged (EAT) 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]