PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019777
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 123aa    MW: 13412.4 Da    PI: 9.2389
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019777genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY506.1e-164412259
                          EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                          r+YYrCtsagCpv+k++er  + +++++itY+g H+h+
  PGSC0003DMP400019777  4 RNYYRCTSAGCPVRKHIERVVDTTSALTITYKGVHDHD 41
                          99***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.339143IPR003657WRKY domain
SuperFamilySSF1182902.75E-13343IPR003657WRKY domain
PfamPF031061.2E-10340IPR003657WRKY domain
SMARTSM007743.8E-7442IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-14443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MTFRNYYRCT SAGCPVRKHI ERVVDTTSAL TITYKGVHDH DMPVPKKRHG PPSAPLIAAT  60
APASVTNMHA KKPEPLQHQK STTQWSVDKE GELTGEKLDV GGEKAMESAR TLLSIGFEIK  120
PC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019777
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343644.14e-82PREDICTED: probable WRKY transcription factor 32
SwissprotP595832e-44WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLM1AS702e-86M1AS70_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000290693e-87(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.18e-47WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]