PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020035
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 422aa    MW: 47075.1 Da    PI: 4.3279
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020035genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.82.8e-131158148
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                          k+i  +s r v fskRr+g++KKA  L   ++a+va+++fss+gk y+
  PGSC0003DMP400020035 11 KKITKESARMVAFSKRRKGLFKKAVQLESKTGAKVAILVFSSSGKPYT 58
                          678999**************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-16362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.343363IPR002100Transcription factor, MADS-box
CDDcd001201.86E-20458No hitNo description
SuperFamilySSF554553.01E-17468IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-11525IPR002100Transcription factor, MADS-box
PfamPF003198.2E-181258IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGKGKQKIEI KKITKESARM VAFSKRRKGL FKKAVQLESK TGAKVAILVF SSSGKPYTCG  60
DVETLCESNS ILDSFNLETH CESNGNWDSF NLETHCESNG NWDSFNLETH CESNGNWDSF  120
NLETHCESNG NWDSFNLETH CESNGNWDSF NLETHCESNG NWDSFNLETH CESNGILDSF  180
NLETHCESNG ILDSFNLETH CESNGILDSF NLETHCESNG ILDSFNLETH CESNGILDSF  240
NLETHCESNG ILDSFNLETH CESNGNWDSF NLERPCSSSG QNGMWDSFNI IERPCSSSGQ  300
NGMWDSFNII ERPCSSSGQN GMWDSFNIIE RPCSSSGHNG MCDSYNLERH CSSSGIPSGS  360
NGIWDSFNIE THCSSSESSG MCDSFNVEAC HNVNELLLLK AHLERTREKL LESQFLDSLW  420
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020035
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-157HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886320.11e-109agamous-like MADS-box protein AGL97
TrEMBLM1AST40.0M1AST4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000294330.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1846544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.11e-09M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]