PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020055
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 304aa    MW: 34147.9 Da    PI: 4.3463
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020055genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.63.2e-181360148
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                          k+i ++s r+vtfskRr+g++KKA EL +  +a++a+++fs++g+ly+
  PGSC0003DMP400020055 13 KKIASDSSRKVTFSKRRTGLFKKARELETKSGARIALLVFSPSGRLYT 60
                          6899*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-22564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.007565IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-19663IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-14727IPR002100Transcription factor, MADS-box
PfamPF003192.4E-201460IPR002100Transcription factor, MADS-box
CDDcd001201.28E-181662No hitNo description
PRINTSPR004043.4E-142742IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-144263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTKGIGKKKI DIKKIASDSS RKVTFSKRRT GLFKKARELE TKSGARIALL VFSPSGRLYT  60
SGDVSLFENN GFSPNPHLST EIASNSYVKP STLRLKNLNV EGCSEIFSPA GEIPIVEDNL  120
KNNGFSSNSD LSSDFSSNFY EDWSTLWLEN FDDEECSEIF SPPGGFYSSG EFPIVVDDLK  180
NNWFSSNSDL LTEISSNSYA KPSTLHLKNF NVEGCSEIFS PDGRFYSSNE FPIVDDSLKN  240
NVFSSNSDFS PSYEDWSTLW LENFNVEECR SVEELMLLKE KLEENRDELI LKMEAEFIDS  300
LLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229320.11e-174myocyte-specific enhancer factor 2A-like
TrEMBLM1ASV00.0M1ASV0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000294580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1716844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-11M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]