PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020150
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family DBB
Protein Properties Length: 275aa    MW: 30724.7 Da    PI: 5.0174
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020150genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.9e-072163339
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                           + C+ ++++ + l+C+ ++  lC +C  e H+       Ht+
  PGSC0003DMP400020150 21 RHLCDFCGNNTALLYCRADSAKLCFTCDREVHSTnqlftkHTR 63
                          679*****************************66778888875 PP
2zf-B_box23.98.9e-0866107542
              zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                            C+++++ ++++ C + ++ lC++C  e+H+     H+++pl
  PGSC0003DMP400020150  66 LCNLCDSSPASILCCTESSVLCQNCDWESHNKqlslHERRPL 107
                           6*****************************779999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4521966IPR000315B-box-type zinc finger
SMARTSM003361.5E-131966IPR000315B-box-type zinc finger
PfamPF006435.9E-62163IPR000315B-box-type zinc finger
CDDcd000211.73E-62363No hitNo description
PROSITE profilePS501199.76962107IPR000315B-box-type zinc finger
CDDcd000211.31E-466107No hitNo description
SMARTSM003360.3167107IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTELKKDQEN HQQQQQEPQR RHLCDFCGNN TALLYCRADS AKLCFTCDRE VHSTNQLFTK  60
HTRWLLCNLC DSSPASILCC TESSVLCQNC DWESHNKQLS LHERRPLEGF SGCPSVSELL  120
SILGFEDLGK KELLYGGDGS YGFSDWVIWD TPSVVSLDDL IANNDSEHNF QAIGVPPLPK  180
NRNAACGKHK EEILSQLREL SKLEPNSGDD QDETVPTIGF QSMEPVQNCP LRFKGLGFMQ  240
NSDQHVVPSS EVKVISFSVT PLIVVKCLIC VTFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136850.0BT013685.1 Lycopersicon esculentum clone 132507F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359430.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822564e-69COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLM1AT280.0M1AT28_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000295910.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.24e-70B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]