PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400020163

Common Name

LOC102587650

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YB

Protein Properties

Length: 144aa MW: 16362.4 Da PI: 5.712

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400020163	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	170.1	2.5e-53	20	115	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 +e++++lPianv+rimk++lP+nakisk+ ket+qecvsefisfvt+eas+kc++ekrkt+ngdd++wal++lGf+dyveplk yl++y PGSC0003DMP400020163 20 KEHEKLLPIANVGRIMKHILPQNAKISKEGKETMQECVSEFISFVTGEASEKCHKEKRKTLNGDDVCWALGNLGFDDYVEPLKRYLHRY 108 7899*********************************************************************************** PP NF-YB 91 relegek 97 relegek PGSC0003DMP400020163 109 RELEGEK 115 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-50	15	132	IPR009072	Histone-fold
SuperFamily	SSF47113	1.13E-38	23	134	IPR009072	Histone-fold
Pfam	PF00808	5.9E-26	26	89	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.3E-18	53	71	No hit	No description
PROSITE pattern	PS00685	0	56	72	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.3E-18	72	90	No hit	No description
PRINTS	PR00615	1.3E-18	91	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MVDTNNILGS FDSSEEGGFK EHEKLLPIAN VGRIMKHILP QNAKISKEGK ETMQECVSEF 60 ISFVTGEASE KCHKEKRKTL NGDDVCWALG NLGFDDYVEP LKRYLHRYRE LEGEKANQNK 120 VDIGNKNEER EKNEFLLGRL YGP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	5e-43	20	110	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400020163

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015169880.1	1e-102	PREDICTED: nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	1e-56	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	M1AT41	1e-101	M1AT41_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400029608	1e-102	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	6e-59	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400020163
Entrez Gene	102587650

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]