PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020222
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 231aa    MW: 23758.8 Da    PI: 9.183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020222genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.6e-102752227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                          kt+lC+ f     Ck+Gd+C+FaHg+
  PGSC0003DMP400020222 27 KTKLCNKFNTAEGCKFGDTCNFAHGE 52
                          8***********************96 PP
2zf-CCCH38.91.4e-12197221126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykt+lC +fa+ G C +GdrC+FaHg
  PGSC0003DMP400020222 197 YKTKLCENFAK-GSCTFGDRCHFAHG 221
                           9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-122353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-72454IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6012553IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-72752IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.9E-1591167IPR004088K Homology domain, type 1
SMARTSM003223.1E-1295165IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.8E-1695165IPR004088K Homology domain, type 1
PROSITE profilePS5008414.48796160IPR004088K Homology domain, type 1
CDDcd001053.55E-1498160No hitNo description
PfamPF000134.6E-1298162IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.8E-16194227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-9194226IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7196222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.319196223IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-10197221IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MNLGSAPPAS RNVAAPPMSN GNAPAVKTKL CNKFNTAEGC KFGDTCNFAH GEWQIGKPIM  60
PSQEDPRAMG VGPAPSRFGG RTEPPVSGPA ASFGTTATAK ISVDSSLAGA IIGKGGVNSK  120
QICRQTGAKL AIREHETDIN LRNIELEGTF EQISQASAMV RELINSLGPV GGPGRAPSGH  180
GRGPAGPGGP APPMSNYKTK LCENFAKGSC TFGDRCHFAH GNDEMRKTGT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020222
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445800.0AC244580.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362228.11e-167PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_006362229.11e-167PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-75C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM1AT961e-167M1AT96_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000296831e-166(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-61C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]