PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020363
Common NameLOC102589616
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 987aa    MW: 111180 Da    PI: 5.0342
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020363genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.9e-14853248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  PGSC0003DMP400020363  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                          78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  PGSC0003DMP400020363  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                           68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001675.98E-121053No hitNo description
PfamPF139214.7E-131070No hitNo description
SuperFamilySSF466895.39E-2133109IPR009057Homeodomain-like
CDDcd116591.97E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.4E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118316.6E-58406648IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYDPNDDPR  120
KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDVRQR KRKRRGIDYN AEIPFEKKPP PGFYDITEED RPVDQPKFPT  240
TIEELEGERR VDKEARLRKQ DVARNKIAER QDAPTSILHA NKLNDPEAVR KRSKLNLPAP  300
QIPDHELEAI AKIGIASDLI GGDELSEGNA ATRALLANYA QTPQHAMTPM RTPQRTPSTK  360
QDSIMMEAEN QRRLTQSQTP LLGGDNPLLH PSDFSGVTPK KREVQTPNPL LTPSATPGAT  420
SLTPRIGMTP SRDSYGMTPK GTPMRDELHI NEEMDMHNNA KLGQFNSKKE LLSGLKSLPQ  480
PKNEYQIVVQ QPPEENEEPE EKIEEDMSDR IAREKAEEEA KRQALLRKRS KVLQRELPRP  540
PIASLELIKS SLMRADEDKS SFVPPTLIEQ ADEMIRKELV SLLEHDNTKY PLDEKPEKEK  600
KKGVKRKIVA EPAIEDFEED ELKEADGLIK DEAHFLRVAM GHESESLDEF VEVHKTTLND  660
IMYFPTRNAY GLSSVAGNME KLAALQNEFE NVKKKMDDDT KKATKLEQKI KVLTNGYQIR  720
AGKLWSQIES TFKKMDTAGT ELECFRALQK QEQLAASHRI NNMWEEVQKQ KELERTLQKR  780
YGDLIADTQK IQHLMDEYRI QDQMQEEIAA KNRALELAKA EIAEKESIPS ADDVEPSGTV  840
QCSNTEENSA SASHVPIEAD VHAEPSGTDQ CSNAEENSAS IEADNVHVEP SGTSQCPIAE  900
ETSASVSHDT TPQDVEGQVQ VADVSTMDAE ALSDHVPMEG QQNLVEESNT DVTKTEDSTV  960
AAGDVDTKTD DSVVVAGDGE ADPKNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027923799Cell division cycle 5-like protein
5xjc_L0.027923799Cell division cycle 5-like protein
5yzg_L0.027923799Cell division cycle 5-like protein
5z56_L0.027923799Cell division cycle 5-like protein
5z57_L0.027923799Cell division cycle 5-like protein
5z58_L0.027923799Cell division cycle 5-like protein
6ff4_L0.027923799Cell division cycle 5-like protein
6ff7_L0.027923799Cell division cycle 5-like protein
6icz_L0.027923799Cell division cycle 5-like protein
6id0_L0.027923799Cell division cycle 5-like protein
6id1_L0.027923799Cell division cycle 5-like protein
6qdv_O0.027923799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDVRQRKRKRR
2198204QRKRKRR
3199204RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020363
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0954960.0EU095496.1 Solanum lycopersicum CDC5-like protein (cdc5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361426.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLM1ATK60.0M1ATK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000299530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]