PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020614
Common NameLOC107063305
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-other
Protein Properties Length: 188aa    MW: 21884.6 Da    PI: 4.3042
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020614genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.72.4e-1429691151
                          HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHH CS
              Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNr 51
                           +e Lee+F ++++p  + +e+L+++lgL+++qVk+WF N+
  PGSC0003DMP400020614 29 IIEKLEEVFSQKPNPENDVIEQLSEELGLDTTQVKIWFYNK 69
                          5799***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.3E-61880IPR001356Homeobox domain
SuperFamilySSF466895.01E-112679IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-122769IPR009057Homeodomain-like
CDDcd000869.51E-102777No hitNo description
PfamPF000469.5E-122869IPR001356Homeobox domain
PROSITE profilePS5007111.4023076IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASQIDASVG STSGQEIGKS NFQHSYEQII EKLEEVFSQK PNPENDVIEQ LSEELGLDTT  60
QVKIWFYNKG YYIKAQQIMK EESEIDRLKN KIMYSENFQI CLDLKEQFCA ASNNPEQQRA  120
ILRDLLNEYA KFGEDVMMIS KIIDHFIEYI EGYHMFFSEF ESKLDNLYNY KDPNGLDLEL  180
RLGLKCD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020614
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754482e-74HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170488.11e-136PREDICTED: homeobox-leucine zipper protein ROC3-like
TrEMBLM1AU401e-134M1AU40_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000303611e-135(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1522966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.16e-11homeobox-7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]