PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020925
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 171aa    MW: 19067.7 Da    PI: 7.429
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020925genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.22e-16113148137
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37 
                           +ep++VNaKQy++Il+RRq+Rak+e+e+kl  k+rk 
  PGSC0003DMP400020925 113 EEPVFVNAKQYHGILRRRQSRAKAESENKL-LKARKV 148
                           69****************************.788875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.4E-7111152IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.428112147IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-12114149IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860117137IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MTSSIHDLSD NCENEQPQKQ SEMQSRSSSP AAELSVPGTV PPDMHYLIPS QLRNADAMAQ  60
TAYPYPDPYY RSIFAPYDAQ PYPAQPYPAQ SMVRLQLMGI QQAGVPLPSD VAEEPVFVNA  120
KQYHGILRRR QSRAKAESEN KLLKARKVFC TKCILPSFYL VATFDSLLVQ *
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020925
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755143e-94HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363651.11e-104PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_006363652.11e-104PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
SwissprotQ84JP13e-42NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLM1AUU21e-121M1AUU2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000308131e-103(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-40nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]