PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400020926

Common Name

LOC102579930

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YA

Protein Properties

Length: 203aa MW: 22577.2 Da PI: 8.2066

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400020926	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.3	1e-32	113	169	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl k+rkpylheSRh hAlrR+Rg+gGrF PGSC0003DMP400020926 113 EEPVFVNAKQYHGILRRRQSRAKAESENKL-LKARKPYLHESRHLHALRRARGCGGRF 169 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.7E-36	111	172	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.01	112	172	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.7E-27	114	169	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	115	137	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	117	137	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	146	169	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MTSSIHDLSD NCENEQPQKQ SEMQSRSSSP AAELSVPGTV PPDMHYLIPS QLRNADAMAQ 60 TAYPYPDPYY RSIFAPYDAQ PYPAQPYPAQ SMVRLQLMGI QQAGVPLPSD VAEEPVFVNA 120 KQYHGILRRR QSRAKAESEN KLLKARKPYL HESRHLHALR RARGCGGRFM TAKEKDESDD 180 KSKANANTDS NKIEVTSSEN AS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-23	113	176	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400020926

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006363651.1	1e-149	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_006363652.1	1e-149	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	2e-65	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	M1AUU3	1e-148	M1AUU3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400030813	1e-148	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-59	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400020926
Entrez Gene	102579930

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]