PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021526
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 142aa    MW: 16490.5 Da    PI: 6.5398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021526genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.3e-123168646
                   AP2  6 VrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46
                          V+ +k +g++ +eIr p    ++ kr++lg+f+taeeA +a+
  PGSC0003DMP400021526 31 VHKRKDSGKYTSEIRNP----ISkKRIWLGTFDTAEEASRAY 68
                          8899************7....246*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.8142790IPR001471AP2/ERF domain
SMARTSM003803.8E-62882IPR001471AP2/ERF domain
PRINTSPR003675.5E-52940IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-123175IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-153175IPR001471AP2/ERF domain
PfamPF008475.2E-53168IPR001471AP2/ERF domain
CDDcd000181.71E-143468No hitNo description
PRINTSPR003675.5E-55167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MANDQTLDTP NLGSRRKKRN DSHKTTRFFR VHKRKDSGKY TSEIRNPISK KRIWLGTFDT  60
AEEASRAYQS KNLEFQKLVE EKQQQWVGQE DDEELWMGQW VQLPGDDDRA IMFSLKLGLP  120
IIDNYGYLLG EFSSLDDLSI C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021526
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755204e-56HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566267.15e-44PREDICTED: uncharacterized protein LOC107864421
TrEMBLM1AW601e-101M1AW60_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000317501e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50751534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-13ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]