PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021619
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 407aa    MW: 45641.4 Da    PI: 6.761
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021619genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.41e-3168172199
                           EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ 
  PGSC0003DMP400021619  68 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRG 156
                           89***************************966778999*************************************************66 PP

                           .SS.SEE..EEEEE-S CS
                    B3  86 .gr.sefelvvkvfrk 99 
                            g+  + +l++ ++r+
  PGSC0003DMP400021619 157 vGElGKDRLFIDWRRR 172
                           6999999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-4259175IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2965171IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-2766155No hitNo description
PfamPF023622.9E-2968172IPR003340B3 DNA binding domain
SMARTSM010191.4E-2268173IPR003340B3 DNA binding domain
PROSITE profilePS5086314.64968173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MNFFDQGGTR QFSHSSSSSQ KIIVPDFSYQ QRSTTNNGED STDLVMNMDL DPADEVGESN  60
TIEREHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLDSST NEKGLLLNFE DRNGKPWRFR  120
YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGVGEL GKDRLFIDWR RRPDAPDHLH  180
YTHFTNHHLH NNLYRSNIQY PAAAAWNRPL FLQPPPPPDH SHLQYSLEPA AGSMSHHHQQ  240
QSHGSSPNYY YDTCNFNNSR TTVVNGNPCP SGSVVYLRSG SAQVPQQAGL MQLRGHSNST  300
SGRVVEPVVF DSVPVVQGKA AAKRFRLFGV NMDCPISDSD ESCEITSSSS SLPNPATTAT  360
YSHVPQFSSL SFRTFNNYDT NPPAATEEES FDKGKASMSL NLDLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-66631733114B3 domain-containing transcription factor NGA1
5os9_B1e-66631733114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021619
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343756.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_015162593.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBLM1AWD50.0M1AWD5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000318630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-71B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]