PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400021690

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 689aa MW: 75529.9 Da PI: 6.1824

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400021690	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.1	2e-29	288	339	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ PGSC0003DMP400021690 288 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 339 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	276	359	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-26	291	339	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.87E-24	592	679	No hit	No description
SMART	SM00666	1.3E-24	593	675	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.7E-27	593	674	No hit	No description
PROSITE profile	PS51745	25.665	593	675	IPR000270	PB1 domain
CDD	cd06407	2.89E-39	594	674	No hit	No description
Pfam	PF00564	2.6E-19	594	674	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MNQICNEGRQ NALVEILEIL TAVCETYKLP LAQTWVPCRH RSVLADGGGF KKSCSSFDGS 60 CMGQVCMSTT DVAFYVVDAH MWGFREACAE HHLQKGQGVA GRAYASQKSC FCEDIGQFCK 120 TEYPLVHYAR LFGLSSCLAI CLRSTHTGND DYILEFFLPP NDGDYTDQLA LLNSLLLTMK 180 QHFRSLRVAS GEELEHNWGS VEIIKASTEE KLGSRFDSVP TTKSLPQSAS VANGRTHPDL 240 MEEQQSPVAL NVAKGAEGVN GTAEAHNHAS VPENKQTGKK SERKRGKAEK TISLEVLQQY 300 FAGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN RSLSKLKRVI ESVQGADGTF 360 SLTSLAPNSL PVAVGSISWP AGINGSPCKA SEYQEEKNEF SNHGTPGSHE EAEPMDQMLG 420 SRIIGNEELS PKQNGFVREG SHRSRTGSFS REESTGTPTS HGSCQGSPSP ANESSPQNEL 480 VNSPTQESVM KVEGSLEPAR QTTGEINLST SFLMPGLYIP EHTQQQFRGM LVEDAGSSHD 540 LRNLCPAGEA MFDERVPEYS WTNPPCSNGI ATNQVPLPVE KMPQFSSRPE VTSVTIKATY 600 REDIIRFRLC LNSGIYKLKE EVAKRLKLEM GTFDIKYLDD DHEWVLITCD ADLQECIDIS 660 RSSGSNVVRL LVHDIMPNLG SSCESSGE*

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MNQICNEGRQ NALVEILEIL TAVCETYKLP LAQTWVPCRH RSVLADGGGF KKSCSSFDGS  60
CMGQVCMSTT DVAFYVVDAH MWGFREACAE HHLQKGQGVA GRAYASQKSC FCEDIGQFCK  120
TEYPLVHYAR LFGLSSCLAI CLRSTHTGND DYILEFFLPP NDGDYTDQLA LLNSLLLTMK  180
QHFRSLRVAS GEELEHNWGS VEIIKASTEE KLGSRFDSVP TTKSLPQSAS VANGRTHPDL  240
MEEQQSPVAL NVAKGAEGVN GTAEAHNHAS VPENKQTGKK SERKRGKAEK TISLEVLQQY  300
FAGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKINKVN RSLSKLKRVI ESVQGADGTF  360
SLTSLAPNSL PVAVGSISWP AGINGSPCKA SEYQEEKNEF SNHGTPGSHE EAEPMDQMLG  420
SRIIGNEELS PKQNGFVREG SHRSRTGSFS REESTGTPTS HGSCQGSPSP ANESSPQNEL  480
VNSPTQESVM KVEGSLEPAR QTTGEINLST SFLMPGLYIP EHTQQQFRGM LVEDAGSSHD  540
LRNLCPAGEA MFDERVPEYS WTNPPCSNGI ATNQVPLPVE KMPQFSSRPE VTSVTIKATY  600
REDIIRFRLC LNSGIYKLKE EVAKRLKLEM GTFDIKYLDD DHEWVLITCD ADLQECIDIS  660
RSSGSNVVRL LVHDIMPNLG SSCESSGE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400021690

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343817.1	0.0	PREDICTED: protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	M1AWJ8	0.0	M1AWJ8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400031945	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400021690

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]